Data information

Cancer abbreviation Cancer name Tumor samples Normal samples ATAC-seq samples Cancer cell line/ Primary tissue H3K4me1 ChIP-seq samples H3K27ac ChIP-seq samples Hi-C
ACC Adrenocortical carcinoma 79 0 9 ACHN (cell line) 0 2 (GSE143653) 2 (GSE105556)
BLCA Bladder Urothelial Carcinoma 408 19 10 RT112 (cell line) 2 (GSE193886) 2 (GSE193886) 1 (GSE155380)
BRCA Breast invasivecarcinoma 1095 113 74 MCF7 (cell line) 2 (GSE38447,GSE57498) 2 (GSE38447,GSE57498) 2 (GSE165570)
CESC Cervical squamous cell carcinoma and endocervical adenocarcinoma 304 3 2 HeLa (cell line) 2 (GSE152020) 2 (GSE152020) 2 (GSE176066)
CHOL Cholangiocarcinoma 36 9 5 None 0 0 0
COAD Colon adenocarcinoma 374 51 38 HCT116 (cell line) 2 (GSE72622,GSE31755) 2 (GSE128590,GSE31755) 1 (GSE200773)
DLBC Lymphoid Neoplasm Diffuse Large B-cell Lymphoma 48 0 0 Primary tissue 0 4 (GSE62245) 2 (GSE168470)
ESCA Esophageal carcinoma 183 11 9 TT (cell line) 1 (GSE131493) 1 (GSE106563) 1 (GSE147123)
GBM Glioblastoma multiforme 154 5 9 U87 (cell line) 2 (GSE236253) 2 (GSE236253) 1 (GSE147123)
HNSC Head and Neck squamous cell carcinoma 520 44 0 SCC25 (cell line) 2 (GSE149043) 2 (GSE103554) 1 (GSE222312)
KICH Kidney Chromophobe 66 25 16 None 0 0 0
KIRC Kidney renal clear cell carcinoma 448 67 34 G401 (cell line) 2 (GSE215023) 2 (GSE120234) 2 (GSE105235)
KIRP Kidney renal papillary cell carcinoma 290 32 13 None 0 0 0
LAML Acute Myeloid Leukemia 28 0 17 CUTLL1 (cell line) 1 (GSE29600) 1 (GSE115893) 1 (GSE130140)
LGG Brain Lower Grade Glioma 516 0 22 Primary tissue 0 4 (GSE129136) 0
LIHC Liver hepatocellular carcinoma 371 50 16 HepG2 (cell line) 4 (GSE26320 GSE26386) 4 (GSE147042) 2 (GSE105381)
LUAD Lung adenocarcinoma 516 59 7 A549 (cell line) 6 (GSE91346 GSE91366) 6 (GSE91248 GSE91214) 2 (GSE168233)
LUSC Lung squamous cell carcinoma 501 51 0 A549 (cell line) 6 (GSE91346 GSE91366) 6 (GSE91248 GSE91214) 2 (GSE168233)
MWSO Mesothelioma 87 0 0 None 0 0 0
OV Ovarian serous cystadenocarcinoma 293 0 9 SK-OV-3 (cell line) 2 (GSE118406) 2 (GSE143653) 1 (GSE147123)
PAAD Pancreatic adenocarcinoma 177 4 26 HPAF-II (cell line) 0 2 (GSE202534) 0
PCPG Pheochromocytoma and Paraganglioma 178 3 0 None 0 0 0
PRAD Prostate adenocarcinoma 492 52 0 PC-3 (cell line) 2 (GSE96243) 2 (GSE143653) 2 (GSE172097)
SARC Sarcoma 259 2 13 A673 (cell line) 2 (GSE144688) 2 (GSE144688) 2 (GSE193824)
SKCM Skin Cutaneous Melanoma 361 1 21 A375 (cell line) 2 (GSE75352 GSE75356) 2 (GSE210423 GSE210424) 2 (GSE143676)
STAD Stomach adenocarcinoma 415 34 9 SNU719 (cell line) 2 (GSE239987) 2 (GSE121498) 1 (GSE135941)
TGCT Testicular Germ Cell Tumors 149 0 14 Primary tissue 1 (GSE31755) 1 (GSE140806) 0
THCA Thyroid carcinoma 505 59 0 BCPAP (cell line) 0 1 (GSE120175) 0
THYM Thymoma 119 2 13 None 0 0 0
UCEC Uterine Corpus Endometrial Carcinoma 175 24 0 Primary tissue 2 (GSE113818) 2 (GSE94031) 1 (GSE139397)
UCS Uterine Carcinosarcoma 57 0 0 Primary tissue 4 (GSE142328) 4 (GSE142328) 0
UVM Uveal Melanoma 80 0 9 None 0 0 0